OBO Foundry dashboard analysis¶

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/tmp/ipykernel_7987/4293058459.py:21: FutureWarning:

The `inplace` parameter in pandas.Categorical.reorder_categories is deprecated and will be removed in a future version. Reordering categories will always return a new Categorical object.

Ontologies by number of axioms

Ontologies by number of classes

Ontologies by how many ontologies use it

Different serialisations used

RDF/XML Syntax    38
Turtle            38
unknown            5
OWL/XML Syntax     2
Turtle Syntax      1
Name: syntax, dtype: int64

Breakdown of used Axiom Types

count mean std min 25% 50% 75% max
AnnotationAssertion 79 2914.261905 10854.141925 0.0 121.75 523.5 1916.50 96738.0
Declaration 79 699.607143 1387.233374 0.0 77.50 295.0 710.25 11135.0
SubClassOf 75 780.595238 2661.373009 0.0 21.75 185.0 624.25 23882.0
ObjectPropertyRange 68 37.238095 63.721272 0.0 7.75 23.5 42.50 520.0
ObjectPropertyDomain 67 34.809524 62.993110 0.0 5.75 21.5 41.75 517.0
DataPropertyRange 59 11.726190 24.150308 0.0 0.00 4.0 10.00 170.0
SubObjectPropertyOf 57 47.535714 93.327051 0.0 0.00 12.0 63.25 709.0
InverseObjectProperties 56 11.095238 21.587379 0.0 0.00 3.0 9.00 126.0
DataPropertyDomain 51 13.214286 35.490393 0.0 0.00 2.0 7.00 235.0
DisjointClasses 50 165.892857 1338.740300 0.0 0.00 1.0 15.75 12277.0
ClassAssertion 50 128.535714 460.539062 0.0 0.00 1.0 20.00 3053.0
EquivalentClasses 44 109.654762 671.303434 0.0 0.00 1.0 36.50 6147.0
SubAnnotationPropertyOf 43 7.619048 14.773719 0.0 0.00 1.0 10.25 85.0
SubDataPropertyOf 37 7.738095 27.844715 0.0 0.00 0.0 5.25 242.0
TransitiveObjectProperty 36 3.595238 7.186197 0.0 0.00 0.0 5.00 38.0
AnnotationPropertyRangeOf 32 3.000000 6.125200 0.0 0.00 0.0 2.00 30.0
FunctionalDataProperty 28 1.654762 4.353351 0.0 0.00 0.0 2.00 26.0
FunctionalObjectProperty 28 2.000000 3.978860 0.0 0.00 0.0 2.00 18.0
SymmetricObjectProperty 27 2.714286 6.128290 0.0 0.00 0.0 2.50 35.0
InverseFunctionalObjectProperty 26 1.095238 2.427846 0.0 0.00 0.0 1.00 12.0
IrrefexiveObjectProperty 24 3.011905 6.792083 0.0 0.00 0.0 1.00 35.0
AsymmetricObjectProperty 20 2.142857 5.176739 0.0 0.00 0.0 0.00 22.0
ObjectPropertyAssertion 19 270.916667 1434.780737 0.0 0.00 0.0 0.00 10267.0
DisjointUnion 18 7.226190 21.206018 0.0 0.00 0.0 0.00 116.0
SubPropertyChainOf 16 3.119048 14.848962 0.0 0.00 0.0 0.00 120.0
DataPropertyAssertion 16 92.845238 449.002576 0.0 0.00 0.0 0.00 3617.0
EquivalentObjectProperties 9 0.845238 4.143493 0.0 0.00 0.0 0.00 36.0
AnnotationPropertyDomain 9 0.238095 0.913342 0.0 0.00 0.0 0.00 6.0
DisjointObjectProperties 9 0.654762 2.538826 0.0 0.00 0.0 0.00 17.0
Rule 8 0.952381 3.636842 0.0 0.00 0.0 0.00 25.0
DifferentIndividuals 7 0.476190 2.817656 0.0 0.00 0.0 0.00 25.0
ReflexiveObjectProperty 6 0.107143 0.439547 0.0 0.00 0.0 0.00 3.0
SameIndividual 3 1.690476 12.997661 0.0 0.00 0.0 0.00 118.0
EquivalentDataProperties 1 0.059524 0.545545 0.0 0.00 0.0 0.00 5.0
NegativeObjectPropertyAssertion 1 0.011905 0.109109 0.0 0.00 0.0 0.00 1.0
DatatypeDefinition 1 0.011905 0.109109 0.0 0.00 0.0 0.00 1.0
DisjointDataProperties 1 0.023810 0.218218 0.0 0.00 0.0 0.00 2.0

Breakdown of used OWL Class Expression constructs

count mean std min 25% 50% 75% max
Class 79 2965.607143 9314.173891 0.0 136.25 907.5 2430.50 78469.0
ObjectUnionOf 53 13.726190 21.242916 0.0 0.00 3.0 16.25 88.0
ObjectAllValuesFrom 48 21.500000 51.647205 0.0 0.00 4.0 19.25 400.0
ObjectSomeValuesFrom 46 289.488095 1818.007750 0.0 0.00 4.0 80.00 16614.0
ObjectIntersectionOf 41 100.130952 679.738961 0.0 0.00 0.0 17.00 6217.0
ObjectExactCardinality 35 5.357143 15.676429 0.0 0.00 0.0 3.25 115.0
DataExactCardinality 29 2.321429 4.319083 0.0 0.00 0.0 3.00 18.0
ObjectComplementOf 23 3.678571 19.909531 0.0 0.00 0.0 1.00 179.0
DataSomeValuesFrom 20 1.785714 4.962683 0.0 0.00 0.0 0.00 33.0
DataAllValuesFrom 19 0.714286 1.639655 0.0 0.00 0.0 0.00 9.0
ObjectHasValue 19 8.059524 34.583007 0.0 0.00 0.0 0.00 211.0
ObjectMinCardinality 19 1.309524 3.620478 0.0 0.00 0.0 0.00 19.0
DataHasValue 18 21.250000 67.290035 0.0 0.00 0.0 0.00 494.0
ObjectMaxCardinality 13 11.285714 97.537583 0.0 0.00 0.0 0.00 894.0
ObjectOneOf 10 5.702381 34.890458 0.0 0.00 0.0 0.00 272.0
DataMinCardinality 7 0.226190 1.434104 0.0 0.00 0.0 0.00 13.0
DataMaxCardinality 6 1.190476 6.825671 0.0 0.00 0.0 0.00 59.0
ObjectHasSelf 1 0.011905 0.109109 0.0 0.00 0.0 0.00 1.0

OBO Score (Experimental)

ontology score score_dash score_impact
57 PROVO 0.324 0.504 0.143
42 OBO 0.322 0.549 0.095
25 FOAF 0.316 0.333 0.298
27 IAO 0.296 0.593 0.000
43 OEO 0.285 0.571 0.000
20 EMMO_crystallography 0.275 0.549 0.000
15 EMMO 0.275 0.549 0.000
6 CHAMEO 0.275 0.549 0.000
77 nfdicore 0.275 0.549 0.000
54 PMDCO 0.275 0.549 0.000
59 QUDT 0.275 0.549 0.000
22 EMMO_mechanical_testing 0.264 0.527 0.000
21 EMMO_mappings 0.252 0.504 0.000
19 EMMO_atomistic 0.252 0.504 0.000
62 SEMMD 0.252 0.504 0.000
18 EMMO_Datamodel 0.252 0.504 0.000
4 CCO 0.252 0.504 0.000
2 BWMD-DOMAIN 0.252 0.504 0.000
3 BWMD-MID 0.252 0.504 0.000
61 SAREF 0.241 0.482 0.000
46 OIEmaterials 0.241 0.482 0.000
45 OIEmanufacturing 0.241 0.482 0.000
47 OIEmodels 0.241 0.482 0.000
71 m4i 0.241 0.482 0.000
64 SO 0.234 0.467 0.000
31 MDO 0.234 0.467 0.000
30 MAMBO 0.234 0.467 0.000
39 NPO 0.234 0.467 0.000
12 DEB 0.234 0.467 0.000
23 EMMO_microstructure 0.234 0.467 0.000
0 AMONTOLOGY 0.234 0.467 0.000
65 SP 0.234 0.467 0.000
67 UO 0.234 0.467 0.000
38 MaterialsMine 0.222 0.444 0.000
13 DISO 0.222 0.444 0.000
41 OA 0.222 0.444 0.000
75 mvc 0.222 0.444 0.000
9 CIF-core 0.222 0.444 0.000
72 mat 0.222 0.444 0.000
26 GPO 0.222 0.444 0.000
40 NanoMine 0.222 0.444 0.000
49 OM 0.222 0.444 0.000
35 MSEO 0.222 0.444 0.000
37 MatOnto 0.222 0.444 0.000
34 MOL_TENSILE 0.219 0.438 0.000
29 LPBFO 0.219 0.438 0.000
82 tribAIn 0.219 0.438 0.000
7 CHEMINF 0.200 0.400 0.000
5 CDCO 0.200 0.400 0.000
79 opmw 0.200 0.400 0.000
1 ASMO 0.200 0.400 0.000
76 mwo 0.200 0.400 0.000
28 LDO 0.200 0.400 0.000
10 CMSO 0.200 0.400 0.000
80 periodictable 0.200 0.400 0.000
55 PODO 0.200 0.400 0.000
53 PLDO 0.200 0.400 0.000
51 P-Plan 0.200 0.400 0.000
24 EXPO 0.200 0.400 0.000
68 WILD 0.200 0.400 0.000
14 DSIM 0.200 0.400 0.000
81 ssos 0.189 0.378 0.000
32 MDS 0.189 0.378 0.000
33 MOL_BRINELL 0.189 0.378 0.000
36 MSLE 0.189 0.378 0.000
69 bmo 0.189 0.378 0.000
48 OIEsoftware 0.189 0.378 0.000
44 OIEcharacterisation-methods 0.189 0.378 0.000
66 SSN 0.189 0.378 0.000
50 OSMO 0.189 0.378 0.000
56 PRIMA 0.189 0.378 0.000
63 SKOS_MDO 0.189 0.378 0.000
73 matinfo 0.167 0.333 0.000
11 CSO 0.167 0.333 0.000
60 QUDV 0.167 0.333 0.000
78 ontorule 0.155 0.311 0.000
52 PATO 0.000 0.000 0.107
8 CHMO 0.000 0.000 0.048
74 metal-alloy 0.000 0.000 0.000
83 vimmp 0.000 0.000 0.000
70 enanomapper 0.000 0.000 0.000
58 Photovoltaics 0.000 0.000 0.000
17 EMMO_BattINFO 0.000 0.000 0.000
16 EMMO_BVC 0.000 0.000 0.000

OBO Score Summary

count mean std min 25% 50% 75% max
score 84.0 0.204357 0.075024 0.0 0.189 0.222 0.241 0.324
score_dash 84.0 0.402119 0.144582 0.0 0.378 0.444 0.482 0.593
score_impact 84.0 0.008226 0.039016 0.0 0.000 0.000 0.000 0.298

OBO dependency graph